| 1 | Department of Industrial Design | Architecture and Design | Master’s |
| 2 | Department of Industrial & Business Management (IBM) | Business and Information Management | Master’s |
| 3 | Department of Information Management | Business and Information Management | Master’s |
| 4 | School of Business (MBA) | Business and Information Management | Master’s |
| 9 | Department of Chemical and Materials Engineering | Engineering | Master’s and Doctoral |
| 10 | Graduate Institute of Electro-Optical Engineering | Engineering | Master’s |
| 11 | Graduate Institute of Biochemical and Biomedical Engineering | Engineering | Master’s |
| 12 | Graduate Institute of Medical Mechatronics | Engineering | Master’s |
| 13 | Department of Electrical Engineering | Engineering | Master’s and Doctoral |
| 14 | Department of Electronic Engineering | Engineering | Master’s and Doctoral |
| 15 | Department of Computer Science and Information Engineering | Engineering | Master’s and Doctoral |
| 16 | Department of Mechanical Engineering | Engineering | Master’s and Doctoral |
| 18 | Department of Health Care Management | Medical and Health | Master’s |
| 19 | Department of Respiratory Therapy | Medical and Health (Medical) | Master’s |
| 20 | Graduate Program in Molecular Medicine for Master’s Degree | Medical and Health (Medical) | Master’s |
| 21 | Graduate Institute of Dental and Craniofacial Science | Medical and Health (Medical) | Master’s |
| 22 | Department of Medical Imaging and Radiological Sciences | Medical and Health (Medical) | Master’s and Doctoral |
| 23 | Graduate Institute of Biomedical Sciences, Division of Biochemistry and Molecular & Cellular Biology | Medical and Health (Medical) | Master’s and Doctoral |
| 24 | Graduate Institute of Biomedical Sciences, Division of Microbiology | Medical and Health (Medical) | Master’s and Doctoral |
| 25 | Graduate Institute of Biomedical Sciences, Division of Physiology & Pharmacology | Medical and Health (Medical) | Master’s and Doctoral |
| 28 | Graduate Institute of Natural Products | Medical and Health (Medical) | Master’s |
| 29 | Department of Medical Biotechnology and Laboratory Science | Medical and Health (Medical) | Master’s |
| 30 | Department of Occupational Therapy , Master Program in Behavioral Science Division of clinical behavior and occupational therapy | Medical and Health (Medical) | Master’s |
| 31 | Department of Physical Therapy, Graduate Institute of Rehabilitation Science | Medical and Health (Medical) | Master’s and Doctoral |
| 32 | Graduate Institute of Early Intervention | Medical and Health (Medical) | Master’s |
| 33 | School of Nursing | Medical and Health (Medical) | Master’s and Doctoral |
| 34 | Graduate Institute of Taiwan Studies | Humanities | Master’s |
| 35 | Department of Architecture | Architecture and Design | Master’s |
| 36 | Department of Finance | Business and Information Management | Master’s |
| 37 | Department of Information Technology | Computer Sciences and Electrical Engineering | Master’s and Doctoral |
| 38 | Department of Applied Chemistry | Sciences | Master’s and Doctoral |
| 39 | Institute of Microbiology & Immunology | Medical and Health | Master’s and Doctoral |
| 40 | Institute of Biochemistry and Biotechnology | Medical and Health (Medical) | Master’s and Doctoral |
| 41 | International Program for Business & Management | Business | Master’s |
| 43 | Teaching Chinese as a second Language Program | Education | Master’s |
| 44 | Applied Linguistics and Language Studies Program | Education | Master’s |
| 45 | Chemical Engineering and Materials Program | Engineering | Master’s and Doctoral |
| 46 | Optomechatronics Program | Engineering | Master’s and Doctoral |
| 47 | Microelectronic Engineering & Applications Program | Engineering | Master’s and Doctoral |
| 48 | Biomedical Engineering Program | Engineering | Master’s and Doctoral |
| 49 | Environmental Engineering Program | Engineering | Master’s and Doctoral |
| 50 | Industrial and Systems Engineering Program | Engineering | Master’s and Doctoral |
| 51 | Civil Engineering | Engineering | Master’s and Doctoral |
| 52 | Electrical Engineering | Engineering | Master’s and Doctoral |
| 53 | Nanotechnology Program | Sciences | Master’s |
| 54 | Biotechnology Program | Sciences | Master’s |
| 58 | Graduate Institute of Design and Arts | Arts | Master’s |
| 60 | Graduate Institute of Professional Development in Education | Business and Information Management | Master’s |